Directory: Top/Science/Biology/Bioinformatics/Online

Top / Science / Biology / Bioinformatics / Online_Services /

Mobyle
Framework and web portal specifically designed for the integration of bioinformatics software and databanks. Provides a tutorial and an interactive guided tour.
http://mobyle.pasteur.fr
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Your Lab Data
A free web-based Laboratory Information Management System (LIMS), aimed at a typical small molecular biology laboratory allowing members to have their own private forum, events, Electronic Lab Notebook (ELN) and a LIMS area.
http://www.yourlabdata.com/
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Silva: Comprehensive Ribosomal RNA Databases
The provided databases comprise SSU and LSU sequences of all three domains. Online search and alignment tools are available and the results can be exported in ARB and FASTA format.
http://www.arb-silva.de
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DBD: Transcription Factor Prediction Database
DBD is a database of predicted transcription factors in completely sequenced genomes. The predicted transcription factors all contain assignments to sequence specific DNA-binding domain families.
http://dbd.mrc-lmb.cam.ac.uk
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Docking Server
Provides an internet service that calculates the site, geometry and energy of small molecules interacting with proteins.
http://www.dockingserver.com
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GenePattern
This platform provides over 100 methods for the analysis and visualization of gene expression, copy number, proteomic and other data. It enables biologists to add new analyses and create workflows that can be shared, edited and published.
http://www.genepattern.org
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UEA Plant sRNA Toolkit
A suite of tools for the analysis of sRNA datasets from high-throughput sequencing experiments.
http://srna-tools.cmp.uea.ac.uk
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PathCase: Pathways Database System
An integrated software system for storing, managing, analyzing, and querying metabolic pathways at genetic, molecular, biochemical and organism levels.
http://nashua.case.edu/pathwaysweb/
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gp2fasta
Converts gp files from NCBI GenPept format to fasta. Its main purpose is to create fasta files with short, but still accurate headers for sequence.
http://gp2fasta.ovh.org/
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BiNCO-wiki
Provides a collection of information on data sources for biological networks, file formats that save biological networks and software to analyze the information of these sources.
http://pgrc-35.ipk-gatersleben.de/pls/htmldb_pgrc/f?p=160:1:3068865960025140
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