Directory: Top/Science/Biology/Bioinformatics/Software/Software

Top / Science / Biology / Bioinformatics / Software / Software_Development /

PISE
Given an abstract definition of a program's parameters, PISE can generate whatever style of interface from the configuration module.
http://www.pasteur.fr/recherche/unites/sis/Pise/
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The XEMBL Project
XEMBL provides access to the EMBL/GenBank/DDBJ Nucleotide Sequence Database, providing output in various XML standards.
http://www.ebi.ac.uk/xembl/
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The Darwin Manual
Guide to running this programming language. Library contains programs to compute pairwise alignments, phylogenetic trees, multiple sequence alignments, and to make secondary structure predictions.
http://www.inf.ethz.ch/personal/gonnet/DarwinManual/DarwinManual.html
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NCICB Core Infrastructure
The National Cancer Institute's Center for Bioinformatics produces the caCORE infrastructure, an open-source enterprise architecture for cancer informatics.
http://ncicb.nci.nih.gov/NCICB/infrastructure
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BioLisp.org
BioLisp.org is a public resource supporting scientists who use Lisp to develop intelligent applications in the biological sciences. We collect and disseminate Lisp biocomputing code, and gather pointers to Lisp and other Intelligent BioComputing methods.
http://nostoc.stanford.edu/Docs/
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The Scriptome
A set of software tools that filter, format, and merge data in tabular or common biological formats. Organized as a classified collection of Perl one-liners.
http://sysbio.harvard.edu/csb/resources/computational/scriptome
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BioWarehouse Database Integration System
Integrates multiple public bioinformatics databases into a single relational database system within a common bioinformatics schema.
http://biowarehouse.ai.sri.com/
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Cell Electrophysiology Simulation Environment (CESE)
A framework to perform electrophysiological simulations. Useful for simulations of action potentials, individual ionic currents, and changes in ionic concentrations.
http://cese.sourceforge.net/
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Pathway Tools
Predict metabolic pathways from genomes and graphically depict pathways. Visualize gene expression data on a metabolic pathway map. Generate a metabolic wall chart. Includes a genome browser and support for transcriptional regulatory networks.
http://bioinformatics.ai.sri.com/ptools/
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Brainwave Biosolutions
Bioinformatics Company focused on the development of data mining products, databases, visualization and analysis tools.
http://www.brainwave.in/
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