Directory: Top/Science/Biology/Bioinformatics/Online_Services/Protein

Top / Science / Biology / Bioinformatics / Online_Services / Protein_Analysis /

3D-JIGSAW
Automated comparative (homology) protein modelling, including an interactive mode which highlights known domains and allows users to select and align templates.
http://www.bmm.icnet.uk/~3djigsaw/
Icnet.uk ~ Site Info Whois Trace Route RBL Check

3D-PSSM Fold Recognition
Combines sequence and structural information for predicting the structure and/or function of your protein sequence, and can detect remote homologies beyond PSI-Blast.
http://www.sbg.bio.ic.ac.uk/~3dpssm/
Ic.ac.uk ~ Site Info Whois Trace Route RBL Check

PDB Ligand Environment
Ligand search engine to EBI Macromolecule Structure Database. Provides PDB ID codes with further visualization and statistics charts.
http://www.ebi.ac.uk/msd-srv/msdsite
Ebi.ac.uk ~ Site Info Whois Trace Route RBL Check

Protein Structure Prediction Server (PSIPRED)
3D protein structure prediction from amino acid sequence. Includes MEMSAT for transmembrane topology prediction, GenTHREADER and mGenTHREADER for fold recognition.
http://bioinf.cs.ucl.ac.uk/psipred/
Ucl.ac.uk ~ Site Info Whois Trace Route RBL Check

Jpred
Secondary protein structure prediction from amino acid sequence; based on a consensus from several methods including DSC, PHD, NNSSP, PREDATOR, ZPRED, and MULPRED.
http://www.compbio.dundee.ac.uk/~www-jpred/
Dundee.ac.uk ~ Site Info Whois Trace Route RBL Check

JAligner
Open source Java implementation of the dynamic programming algorithm Smith-Waterman for biological local pairwise sequence alignment.
http://jaligner.sourceforge.net/
Sourceforge.net ~ Site Info Whois Trace Route RBL Check

Swiss-Model
Automated comparative protein modelling server to make protein modelling accessible to biochemists and molecular biologists worldwide - from GlaxoWellcome Experimental Research, Geneva, Switzerland.
http://swissmodel.expasy.org//SWISS-MODEL.html
Expasy.org ~ Site Info Whois Trace Route RBL Check

Swiss-Pdb Viewer
User-friendly interface allowing analysis of several proteins at once, including superimposition to deduce structural alignments, and compare active sites. From GlaxoWellcome Experimental Research, Geneva, Switzerland.
http://au.expasy.org/spdbv/
Expasy.org ~ Site Info Whois Trace Route RBL Check

Proteomics Tools
Online software for protein analysis from the Swiss Institute of Bioinformatics (SIB).
http://www.expasy.org/tools/
Expasy.org ~ Site Info Whois Trace Route RBL Check

Melanie II 2-D Analysis Software
Powerful, state-of-the-art, 2-D analysis software package with user-friendly interface from the Swiss Institute of Bioinformatics.
http://au.expasy.org/melanie/
Expasy.org ~ Site Info Whois Trace Route RBL Check