Directory: Top/Science/Biology/Bioinformatics/Online_Services/Protein

Top / Science / Biology / Bioinformatics / Online_Services / Protein_Analysis /

COLORADO3D
Service to aid visualisation of potential errors in protein structures. Free for academic users.
http://asia.genesilico.pl/colorado3d/
Genesilico.pl ~ Site Info Whois Trace Route RBL Check

SSM
Provides interactive service for matching protein structures in 3D and looking for structural homologues in PDB and SCOP databases, as well as in user-uploaded sets of structures.
http://www.ebi.ac.uk/msd-srv/ssm
Ebi.ac.uk ~ Site Info Whois Trace Route RBL Check

MSDmotif
Service for protein sequence motifs detection. Search based on the small 3D motifs defined by J.Milner-White.
http://www.ebi.ac.uk/msd-srv/msdmotif/
Ebi.ac.uk ~ Site Info Whois Trace Route RBL Check

TRANSFAC-The Transcription Factor Database
A compilation of transcriptional regulatory protein factors and their cognate gene promoter elements along with DNA sequence search and analysis programs - from GBF, Braunschweig, Germany.
http://www.gene-regulation.com/pub/databases.html#transfac
Gene-regulation.com ~ Site Info Whois Trace Route RBL Check

MODBASE
A database of annotated comparative protein structure models. The database includes fold assignments and alignments as well as information about putative ligand binding sites, SNP annotation, and protein-protein interactions.
http://salilab.org/modbase
Salilab.org ~ Site Info Whois Trace Route RBL Check

Wurst
A protein threading server using sequence profiles combined with a protein sequence to structure compatibility function based on Bayesian statistics.
http://www.zbh.uni-hamburg.de/wurst
Uni-hamburg.de ~ Site Info Whois Trace Route RBL Check

DisEMBL
Computational tool for sequence based prediction of intrinsic protein disorder and unstructured regions within a protein.
http://dis.embl.de
Embl.de ~ Site Info Whois Trace Route RBL Check

NUMODs Motifs Finder
Finds Nuclease-Associated Modular DNA-binding Domains (NUMODs) in protein sequences
http://bioinfo.weizmann.ac.il/~naaman1/NUMODs/
Weizmann.ac.il ~ Site Info Whois Trace Route RBL Check

Isoelectric Point Estimator
Calculated using the FASTA amino acid sequence and pKa values for. Allows consideration of post-translational modifications.
http://www.nihilnovus.com/Palabra.html
Nihilnovus.com ~ Site Info Whois Trace Route RBL Check

Entelechon Backtranslation tool
Online backtranslation tool for translating a protein sequence into a DNA sequence. The codon usage can be downloaded from a database and adjusted manually for each amino acid, if required. Java applet.
http://www.entelechon.com/bioinformatics/backtranslation.php
Entelechon.com ~ Site Info Whois Trace Route RBL Check