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Top / Science / Biology / Bioinformatics / Online_Services / Protein_Analysis /

Molecules To Go
Search engine for visualizing 3-D biomolecular models. From the Center for Molecular Modeling, NIH, Maryland.
http://molbio.info.nih.gov/cgi-bin/pdb/
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UniProt
UniProt (Universal Protein Resource) is a catalog of information on proteins. It is a central repository of protein sequence and function created by joining the information contained in Swiss-Prot, TrEMBL, and PIR.
http://www.pir.uniprot.org/
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iMolTalk
Provides protein structure information such as structural alignment, residue contact, protein-protein interfaces, contact maps and general information extraction.
http://i.moltalk.org
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Dali server
The Dali server is a network service for comparing protein structures in 3D.
http://www.ebi.ac.uk/dali/
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ConSurf
Identifies functionally important regions on the surface of a protein or domain, of known three-dimensional (3D) structure using the phylogenetic relations between close sequence homologues.
http://consurf.tau.ac.il/overview.html
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MultiProt
Service for detecting the multiple structural alignments of proteins. Uses the common geometrical cores between the input molecules. Does not require that all the input molecules participate in the alignment.
http://bioinfo3d.cs.tau.ac.il/MultiProt/
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ESyPred3D
ESyPred3D is an automated homology modeling program getting benefit of the increased alignment performances of a new alignment strategy using neural networks. The final three dimensional structure is built using the modeling package MODELLER.
http://www.fundp.ac.be/urbm/bioinfo/esypred/
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PFP: Automated Function Prediction Server
Accepts a single query protein sequence and returns the most probable Gene Ontology functional annotations in each of the three ontologies.
http://dragon.bio.purdue.edu/pfp/
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ELM - Functional Sites in Proteins
Predicts functional sites (linear motifs) in proteins, such as post-translational modification sites, ligand motifs, and targeting signals. Context-based rules and logical filters are applied to improve predictions.
http://elm.eu.org
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Phyre- Protein Homology/analogY Recognition Engine
Phyre is a free for academics service for predicting the 3-dimensional structure of a protein amino acid sequence.
http://www.sbg.bio.ic.ac.uk/phyre/
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