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MedScan
Commercial Windows natural language processing software for the automated extraction of biological data from scientific literature.
http://www.ariadnegenomics.com/products/medscan.html
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Genespotter
Commercial Windows software for analyzing biochip image data.
http://www.genespotter.de
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JSTRING
Java program for searching Tandem Repeats (TR) in a DNA sequence. It shows the results also in a graphical format.
http://bioinf.dms.med.uniroma1.it/JSTRING/
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DNAMAN
Commercial software for DNA and Protein sequence analysis and manipulation. Available for Windows and Mac OS X.
http://www.lynnon.com
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RGBG Analyzer
Commercial software to analyses the red, green, blue, and gray color values of user-selected areas of images in gif, tiff, bmp, jpeg format. Windows 2000 and XP.
http://www.immunokin.com
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MIRA
A sequence assembly suite with SNP detection for "hard" projects.
http://chevreux.org/projects_mira.html
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Expression Profiler
An open, extensible web-based collaborative platform for microarray gene expression, sequence and PPI data analysis, exposing distinct chainable components for clustering, pattern discovery, statistics, machine-learning algorithms and visualization.
http://www.ebi.ac.uk/expressionprofiler/
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Tandem Repeats Finder
Locates and displays tandem repeats in DNA sequences.
http://tandem.bu.edu/trf/trf.html
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Mauve
Free software for constructing global alignments of multiple rearranged genomes. The visualization environment displays sequence similarity profiles and annotated sequence features.
http://gel.ahabs.wisc.edu/mauve/
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INCA - INteractive Codon Analysis
Windows software that computes and charts codon and amino acid frequencies in whole genomes. Produces fully customizable scatter plots with the possibility to export graphics or text files for further analysis. Free for academic users.
http://www.bioinfo-hr.org/inca
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