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GoCore
GoCore is a free Excel based tool for protein sequence alignment, comparisons and functional predictions in a simple, visually appealing, manner.
http://www.helsinki.fi/project/ritvos/GoCore/
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ADF MAGE-ML
Open source Java software for checking and conversion of MicroArray Array Design data file (ADF -Array Design File- MAGE-ML).
http://adfconverter.sourceforge.net/
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Sockeye
3D visualisation platform for Comparative Genomics visualisation.
http://www.bcgsc.ca/gc/bomge/sockeye/
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Seqtools
Commercial Windows software for batch handling and analysis of nucleotide and protein sequences.
http://www.seqtools.dk
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Gints
Object-oriented regulation network simulator written in Java. Includes downloadable software and documentation. The site is in French and English.
http://gints.free.fr/english/eng_whatsAbout.htm
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SeWeR
An integrated portal for common web-based bioinformatics services. Built in Javascript as a standalone browser application.
http://bioinformatics.org/sewer/
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Nano+Bio-Centre
Offers a range of free software tools for annotating an entire genome, assembling sequences, gap closing and analysis of microarrays.
http://nbc3.biologie.uni-kl.de
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Genome-tools Web Interface
Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format.
http://sourceforge.net/projects/genome-tools/
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MELTING
Computes, for a nucleic acid duplex, the enthalpy, the entropy and the melting temperature of the helix-coil transitions.
http://www.ebi.ac.uk/~lenov/meltinghome.html
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DNPTrapper
A Linux assembly editing and visualization tool specifically designed for manual analysis and finishing of repeated regions.
http://dnptrapper.sourceforge.net/
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