sys-bio.org Software for simulating metabolic, signal and genetic networks. Home of SBW, Jarnac, JDesigner and winSCAMP. http://sbw.kgi.edu/ Kgi.edu~Site InfoWhoisTrace RouteRBL Check
MAFFT Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies. http://align.bmr.kyushu-u.ac.jp/mafft/online/server/ Kyushu-u.ac.jp~Site InfoWhoisTrace RouteRBL Check
GeneRunner A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product. http://www.generunner.net Generunner.net~Site InfoWhoisTrace RouteRBL Check
gsuffix C-language implementations of generalized suffix-based algorithms useful for searching for string patterns in sets of input strings and is released under the terms of the LGPL license. http://compbio.charite.de/index.php/gsuffix.html Charite.de~Site InfoWhoisTrace RouteRBL Check
Biomax BioXM Knowledge Management Environment Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models as an extendible network of interrelated concepts. http://www.biomax.com/products/bioxm.php Biomax.com~Site InfoWhoisTrace RouteRBL Check
Cytoscape Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualizatio http://www.cytoscape.org/ Cytoscape.org~Site InfoWhoisTrace RouteRBL Check
Automated Codon Usage Analysis Software ACUA is a freeware VB based interface for Insilico codon analysis. It provides nucleotide analysis, statistical codon analysis and positional nucleotide analysis. It presents the results in spreadsheets which can be utilized for further statistical analy http://www.bioinsilico.com/acua Bioinsilico.com~Site InfoWhoisTrace RouteRBL Check