Directory: Top/Science/Biology/Bioinformatics/Software

Top / Science / Biology / Bioinformatics / Software /

sys-bio.org
Software for simulating metabolic, signal and genetic networks. Home of SBW, Jarnac, JDesigner and winSCAMP.
http://sbw.kgi.edu/
Kgi.edu ~ Site Info Whois Trace Route RBL Check

MAFFT
Multiple sequence alignment program for linux and other unix-like operating systems. Offers a range of multiple alignment strategies.
http://align.bmr.kyushu-u.ac.jp/mafft/online/server/
Kyushu-u.ac.jp ~ Site Info Whois Trace Route RBL Check

GeneRunner
A fairly old Windows sequence analysis tool for everyday lab use. Formerly a commercial product.
http://www.generunner.net
Generunner.net ~ Site Info Whois Trace Route RBL Check

Unipro UGENE: Integrated Bioinformatics Tools
Free cross-platform bioinformatics software package for DNA and protein sequence analysis.
http://ugene.unipro.ru
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gsuffix
C-language implementations of generalized suffix-based algorithms useful for searching for string patterns in sets of input strings and is released under the terms of the LGPL license.
http://compbio.charite.de/index.php/gsuffix.html
Charite.de ~ Site Info Whois Trace Route RBL Check

Biomax BioXM Knowledge Management Environment
Project-centered, distributed software platform that provides a central inventory of information and knowledge. Users create, manage and visualize scientific models as an extendible network of interrelated concepts.
http://www.biomax.com/products/bioxm.php
Biomax.com ~ Site Info Whois Trace Route RBL Check

CentiBiN: Centralities in Biological Networks
Application for the calculation and visualization of centralities for biological networks.
http://centibin.ipk-gatersleben.de/
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Biochemfusion: Enabling Biochemformatics
Software for working with post-translationally or chemically modified peptides and proteins including proteins as both sequences and chemical structures.
http://www.biochemfusion.com
Biochemfusion.com ~ Site Info Whois Trace Route RBL Check

Cytoscape
Open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data. It is also a general platform for complex network analysis and visualizatio
http://www.cytoscape.org/
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Automated Codon Usage Analysis Software
ACUA is a freeware VB based interface for Insilico codon analysis. It provides nucleotide analysis, statistical codon analysis and positional nucleotide analysis. It presents the results in spreadsheets which can be utilized for further statistical analy
http://www.bioinsilico.com/acua
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